PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G022400.4
Common NameB456_005G022400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 325aa    MW: 35609.6 Da    PI: 9.0199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G022400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.3e-06270304440
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STC CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsK 40 
                         +h+ +Er RR++i +++  L++l+P +   ++ K  +K
  Gorai.005G022400.4 270 SHSLAERVRREKISERMKFLQDLVPGC---NKVKsINK 304
                         8*************************8...66555776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-8264302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.93E-6264304No hitNo description
PROSITE profilePS5088810.645266318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-8269305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKDKAFMSE ELKNRTTTRQ QQPAWNPCGF MTEMSTNELN CGTEQVGNYF FNPNWENSMD  60
QSDPFESALS SMVSSPAASN VGSGENVMMR ELIGKLWNIC NSKDIITNST NASSYSTPLN  120
SPPFSTDPGF AERAARFSCF GGLNDPLRDS LKLSGHVNGT QTIKNSTLSR SSSPENAESG  180
VSKEESSVSE QLPGGNNKKR KSIPRGKAKE TPSPATVDAK VAAENNDESN AKRSKQNGTV  240
KASNKEDSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVK  300
SINKTCVTLK TFMSDKTMFV SGDR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481609.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9FJL43e-54BH078_ARATH; Transcription factor bHLH78
SwissprotQ9SRT21e-54BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D2R8520.0A0A0D2R852_G
STRINGPOPTR_0002s23650.11e-100(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.17e-51bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]